cellular-imaging-amsterdam-umc/cisegmentation
v0.5.0MIT
Agent skills for the Bilayers CI Segmentation workflow and its measurement databases.
analyze-cisegmentation-measurements
Analyze, query, and explain CI Segmentation measurement databases in DuckDB or SQLite for object morphology, per-channel intensity statistics, label sets, image or HCS plate metadata, mask relationships, focus assignments, SQL, pandas, and interpretation of CI Segmentation measurement results.
use-cisegmentation-workflow
Configure, launch, monitor, and recover the Bilayers CI Segmentation workflow for OME-Zarr images or HCS plates using Cellpose, Cellpose-SAM, StarDist, InstanSeg, or Spotiflow.