use-cisegmentation-workflow
Configure, launch, monitor, and recover the Bilayers CI Segmentation workflow for OME-Zarr images or HCS plates using Cellpose, Cellpose-SAM, StarDist, InstanSeg, or Spotiflow, including spot-only detection, spatial and colocalization measurements, cell/nucleus lineages, independent spot trajectories, and separate geometry databases.
- Version
- 4
Pinned to revision 5041d3ff50d6, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/use-cisegmentation-workflow/SKILL.md
- skills/use-cisegmentation-workflow/references/OUTPUTS.md
- skills/use-cisegmentation-workflow/references/PARAMETERS.md
- skills/use-cisegmentation-workflow/references/PUBLICDATA.md
- skills/use-cisegmentation-workflow/references/RESOURCES.md
- skills/use-cisegmentation-workflow/references/TROUBLESHOOTING.md
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