initialize-analysis
Initialize or organize a new or existing R statistical or epidemiologic analysis project, including a latest RMD, partial scripts, project instructions, AGENTS.md, Quarto setup, references and gitignore. Use for resuming unfinished initialization too.
Pinned to revision bf27386ffe1f, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/initialize-analysis/SKILL.md
- skills/initialize-analysis/assets/AGENTS.md
- skills/initialize-analysis/assets/guidelines.bib
- skills/initialize-analysis/assets/project-instructions.md
- skills/initialize-analysis/assets/starter/R/example.R
- skills/initialize-analysis/assets/starter/R/functions.R
- skills/initialize-analysis/assets/starter/R/main.R
- skills/initialize-analysis/assets/starter/R/setup.R
- skills/initialize-analysis/assets/starter/README.Rmd
- skills/initialize-analysis/assets/starter/_quarto.yml
- skills/initialize-analysis/assets/starter/gitignore.template
- skills/initialize-analysis/assets/starter/index.qmd
- skills/initialize-analysis/assets/starter/quarto/about.qmd
- skills/initialize-analysis/assets/starter/quarto/background.qmd
- skills/initialize-analysis/assets/starter/quarto/example.qmd
- skills/initialize-analysis/assets/starter/quarto/functions.qmd
- skills/initialize-analysis/assets/starter/quarto/setup.qmd
- skills/initialize-analysis/assets/starter/references.bib
- skills/initialize-analysis/references/REPOSITORY-BLUEPRINT.md
- skills/initialize-analysis/references/analysis-plan.md
- skills/initialize-analysis/references/conventions.md
- skills/initialize-analysis/references/data-handling.md
- skills/initialize-analysis/references/data-sources.md
- skills/initialize-analysis/references/github-workflow.md
- skills/initialize-analysis/references/initialization.md
- skills/initialize-analysis/references/onboarding.md
- skills/initialize-analysis/references/quarto.md
Every link opens the file at its source, pinned to the revision this page describes.