vagishhemmige/r-analysis-workflow

{
  "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
  "name": "r-analysis-workflow",
  "version": "0.1.12",
  "description": "Set up, document, report and review R biomedical analysis projects: analysis plans, AGENTS.md, Quarto explainer sites, GitHub workflow, and blind clinical, statistical, coding and librarian reviews.",
  "author": {
    "name": "Vagish Hemmige"
  },
  "license": "MIT",
  "keywords": [
    "R",
    "epidemiology",
    "Quarto",
    "research",
    "gtsummary"
  ],
  "extensions": {
    "com.openai": {
      "interface": {
        "displayName": "R Analysis Workflow",
        "shortDescription": "R research project workflows",
        "longDescription": "Workflows for R analysis projects that publish their code and methods on GitHub: project setup from a shared blueprint, analysis plans (STROBE+RECORD, CHEERS 2022 or descriptive) with open decisions as GitHub issues, AGENTS.md with one row per data source and its access package, a Quarto site that explains each script from its actual source, reporting with flowchart, gtsummary, ggplot2 and ggsurvfit, collaborator onboarding, and reviews by independent clinician, clinician-researcher, statistician, coding-expert and librarian reviewers using only published material. Uses installed Posit skills where relevant.",
        "developerName": "Vagish Hemmige",
        "capabilities": [],
        "defaultPrompt": [
          "Set up my R analysis project from my latest RMD and protocol.",
          "Run a full blind review of this repository.",
          "Write the Quarto page for the script I just added to main.R."
        ]
      }
    }
  }
}