plant-public

Public plant-pathology bioinformatics for MiniMax Code: UniProt, NCBI, InterProScan, PDB, AlphaFold DB, Ensembl Plants, Sol Genomics (Solanaceae), and Arabidopsis BAR / ATTED / STRING.

This Plugin ships a stdio MCP server. It does not bundle any local genomes or RNA-seq matrices. All sequence and annotation data come from public APIs. Web-only tools (SignalP, PlantCARE, …) return submission guidance rather than invented results.

Try it

Look up tomato WRKY transcription factors in UniProt and NCBI. Then get InterProScan domains
for one protein and fetch its AlphaFold model if a UniProt accession exists.

用 Ensembl Plants 查 solanum_lycopersicum 的 NPR1 同源基因，再给出 Sol Genomics BLAST 该怎么提交。

Expected result: the agent calls uniprot_search / ncbi_search / ensembl_plants_gene (or plant_resource_guide("solgenomics") for the SGN web path), returns accessions, FASTA or domain tables from the live APIs, and marks any web-only step as a guide rather than fake data.

Requirements

• Python 3.10+ and uv on PATH (mcp.json starts the server with uv run server.py).
• Optional NCBI_API_KEY environment variable to raise NCBI rate limits. No key is required.
• Windows, macOS, and Linux.

Data and network

The MCP server contacts public scholarly APIs only:

• rest.uniprot.org
• eutils.ncbi.nlm.nih.gov
• www.ebi.ac.uk (InterProScan)
• data.rcsb.org / RCSB PDB search
• alphafold.ebi.ac.uk
• rest.ensembl.org (Ensembl Plants)
• bar.utoronto.ca, atted.jp, string-db.org (Arabidopsis)

No telemetry. No credentials in the package. Optional NCBI_API_KEY stays in the user's environment.

License

MIT. See LICENSE. Upstream databases have their own terms; respect rate limits.