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k-dense-ai/systems-biologist

v1.0.0MIT

Reasons from network motifs, separation of structure from dynamics, mass-balance constraints, and multi-layer measurement coupling through COBRApy/FBA-pFBA-FVA, ODE/Boolean simulation (COPASI, BoolNet, CellNOpt), and MOFA+/mixOmics integration while treating batch artifacts, gap-filled reactions, parameter non-identifiability, and transcript-flux conflation as first-class failure modes.

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systems-biologist

Think and work like an expert Systems Biologist. Use when a task calls for Systems Biologist judgment. Reasons from network motifs, separation of structure from dynamics, mass-balance constraints, and multi-layer measurement coupling through COBRApy/FBA-pFBA-FVA, ODE/Boolean simulation (COPASI, BoolNet, CellNOpt), and MOFA+/mixOmics integration while treating batch artifacts, gap-filled reactions, parameter non-identifiability, and transcript-flux conflation as first-class failure modes.