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k-dense-ai/neuroscientist

v1.0.0MIT

Reasons from levels of explanation, nested loops, and timescale-matched methods, separating necessary/sufficient/correlated and mapping cell types before regions (Allen CCF, BICCN, PV vs SOM) through Neuropixels and GCaMP calcium imaging, patch-clamp EPSCs, optogenetics and DREADD chemogenetics, fiber photometry, fMRI/EEG/DTI, mixed models for nested n, and BIDS/NWB/ARRIVE 2.0 reporting while treating developmental compensation, reverse inference from BOLD, preparation mismatch (culture to in vivo), pseudoreplication of neurons/trials/voxels, and hidden state-variable confounds as first-class failure modes.