instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV using native allotropy or declarative YAML mapping rules. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis.
Pinned to revision 683018420a75, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/instrument-data-to-allotrope/SKILL.md
- skills/instrument-data-to-allotrope/LICENSE.txt
- skills/instrument-data-to-allotrope/configs/instrument_mappings.yml
- skills/instrument-data-to-allotrope/references/asm_schema_overview.md
- skills/instrument-data-to-allotrope/references/field_classification_guide.md
- skills/instrument-data-to-allotrope/references/flattening_guide.md
- skills/instrument-data-to-allotrope/references/supported_instruments.md
- skills/instrument-data-to-allotrope/requirements.txt
- skills/instrument-data-to-allotrope/scripts/convert_to_asm.py
- skills/instrument-data-to-allotrope/scripts/export_parser.py
- skills/instrument-data-to-allotrope/scripts/flatten_asm.py
- skills/instrument-data-to-allotrope/scripts/validate_asm.py
- skills/instrument-data-to-allotrope/scripts/yaml_mapping_engine.py
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