herry423/bionexus-reliability

v1.0.0-rc.2Apache-2.0

Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).

GitHub

MCP servers

Declared configuration, as published in mcp.json. The directory shows indexed content; it never connects to or executes these servers.

bionexus-local-mcpstdio

{
  "type": "stdio",
  "command": "python",
  "args": [
    "${PLUGIN_ROOT}/scripts/local_mcp_server.py"
  ],
  "cwd": "${PLUGIN_ROOT}"
}

pubmedstreamable-http

{
  "type": "streamable-http",
  "url": "https://pubmed.mcp.claude.com/mcp"
}

biorenderstreamable-http

{
  "type": "streamable-http",
  "url": "https://mcp.services.biorender.com/mcp"
}

biorxivstreamable-http

{
  "type": "streamable-http",
  "url": "https://hcls.mcp.claude.com/biorxiv/mcp"
}

consensusstreamable-http

{
  "type": "streamable-http",
  "url": "https://mcp.consensus.app/mcp"
}

c-trialsstreamable-http

{
  "type": "streamable-http",
  "url": "https://hcls.mcp.claude.com/clinical_trials/mcp"
}

chemblstreamable-http

{
  "type": "streamable-http",
  "url": "https://hcls.mcp.claude.com/chembl/mcp"
}

synapsestreamable-http

{
  "type": "streamable-http",
  "url": "https://mcp.synapse.org/mcp"
}

wileystreamable-http

{
  "type": "streamable-http",
  "url": "https://connector.scholargateway.ai/mcp"
}

owkinstreamable-http

{
  "type": "streamable-http",
  "url": "https://mcp.k.owkin.com/mcp"
}

otstreamable-http

{
  "type": "streamable-http",
  "url": "https://mcp.platform.opentargets.org/mcp"
}

What this package declares

The files a client reads when it loads this plugin, exactly as this revision carries them.

{
  "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
  "name": "bionexus-reliability",
  "version": "1.0.0-rc.2",
  "description": "Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).",
  "author": {
    "name": "BioNexus Team"
  },
  "license": "Apache-2.0",
  "keywords": [
    "bionexus",
    "bioinformatics",
    "single-cell",
    "scanpy",
    "scvi-tools",
    "nextflow",
    "nf-core",
    "allotrope",
    "mcp",
    "variant-interpretation",
    "spatial-transcriptomics",
    "squidpy"
  ],
  "skills": "./skills/",
  "mcpServers": "./mcp.json"
}

What else this package ships

These files come with the package and this site does not publish them. They are listed so you know what is there before you install it.

102Python files
17YAML files
6text files
2JSON files
LICENSE

View on GitHub

Fields the format does not define

This package's plugin.json declares these at its top level. The Agent Plugins format gives them no meaning, so a client loads the plugin and ignores them.

skills
mcpServers