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deep-medchem/deepmedchem

v0.1.0MIT

Search public chemical spaces by molecular similarity with DeepMedChem.

MCP servers

Declared configuration, as published in mcp.json. The directory shows indexed content; it never connects to or executes these servers.

deepmedchemstreamable-http
{
  "type": "streamable-http",
  "url": "https://mcp.deepmedchem.com/mcp"
}

What this package declares

The files a client reads when it loads this plugin, exactly as this revision carries them.

{
  "$schema": "https://agent-plugins.org/schemas/1.0.0/plugin.schema.json",
  "name": "deepmedchem",
  "version": "0.1.0",
  "description": "Search public chemical spaces by molecular similarity with DeepMedChem.",
  "author": {
    "name": "Deep MedChem",
    "email": "info@deepmedchem.com",
    "url": "https://deepmedchem.com"
  },
  "homepage": "https://github.com/Deep-MedChem/deepmedchem-claude-plugin",
  "license": "MIT",
  "keywords": ["chemistry", "cheminformatics", "molecules", "similarity search", "drug discovery"],
  "extensions": {
    "com.openai": {
      "interface": {
        "displayName": "DeepMedChem",
        "shortDescription": "Molecular similarity search",
        "longDescription": "Search public make-on-demand chemical spaces, such as Enamine REAL, for purchasable molecules similar to a structure you supply as SMILES. Choose fingerprint (Morgan/Tanimoto), 3D shape or electrostatic (ESP) similarity. Results appear as an interactive structure grid with scores, list prices and a CSV export. Searches run one SMILES against one database and return up to 20 hits. Guest access needs no account. Scores describe structural similarity, not biological activity or safety, and results are a bounded shortlist rather than every match.",
        "developerName": "Deep MedChem",
        "category": "Research",
        "capabilities": ["Read"],
        "websiteURL": "https://deepmedchem.com",
        "privacyPolicyURL": "https://cheese.deepmedchem.com/privacy-policy",
        "termsOfServiceURL": "https://cheese.deepmedchem.com/terms-and-conditions",
        "defaultPrompt": [
          "Find 20 molecules similar to aspirin, SMILES CC(=O)Oc1ccccc1C(=O)O, in Enamine REAL.",
          "Search Enamine REAL for shape-similar analogues of c1ccc(CCNc2ncnc3ccccc23)cc1.",
          "Which chemical space databases can I search?"
        ],
        "brandColor": "#24265D",
        "composerIcon": "./assets/icon.png",
        "logo": "./assets/icon.png"
      }
    }
  }
}

What else this package ships

These files come with the package and this site does not publish them. They are listed so you know what is there before you install it.

  • LICENSE
View on GitHub

Client extensions

Data this package carries for particular clients. The directory lists the clients named and never reads what is addressed to them.

  • com.openai