bbuchsbaum/fmri-workbench
Modular BIDS discovery, first-level fMRI modeling, group inference, and reporting with explicit scientific decisions.
Coordinate end-to-end task-fMRI analyses across BIDS discovery, fmrireg models, fmrigds group inference, and neuromosaic reports. Use for multi-stage analysis plans or execution, not a single-package question.
Inspect and audit BIDS fMRI datasets with bidser: inherited metadata, derivatives, events, confounds, and acquisition matching. Use for dataset discovery or analysis readiness; do not fit models or preprocess images.
Build and validate group-level fMRI analyses with fmrigds from existing effect/statistic maps or tables: covariates, uncertainty, repeated measures, corrections, and cohort examination. Does not require first-level refitting.
Specify, diagnose, fit, or export first-level task-fMRI GLMs with fmrireg, including HRFs, nuisance baselines, contrasts, and native batch jobs. Use independently of group analysis and reports; not for preprocessing.
Create neuromosaic fMRI map montages, atlas-annotated cluster reports, or interactive explorers from existing statistical outputs. Use without refitting analyses; distinguish display thresholds from statistical inference.