aidenlab/geenee

v1.0.1MIT

Geenee: drive a genome workspace by chatting. One page beside the conversation holds the igv genome browser, the Juicebox Hi-C contact-map viewer and the Spacewalk 3D chromatin viewer. Search ENCODE/4DN, load maps, tracks and 3D ensembles, navigate genes and loci, compare, share. Connects to the Aiden Lab's hosted MCP server; nothing runs locally.

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geenee

Drives Geenee, the Aiden Lab's genome workspace holding the igv genome browser, the Juicebox Hi-C contact-map viewer and the Spacewalk 3D chromatin viewer, through the Geenee MCP tools (open_geenee, igv_*, juicebox_*, spacewalk_*), or through the bundled geenee CLI when the MCP connector is not available. Use whenever the user mentions Geenee, IGV, Juicebox, Spacewalk, a genome browser, Hi-C or contact maps, .hic or .sw files, loops, TADs, compartments, 3D chromatin structure or ensembles, ENCODE or 4DN data, bigWig/BED/peak tracks, or asks to open, load, navigate, compare, track, or share a genome view.