scvelo
RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.
- Version
- 1.2
- License
- BSD-3-Clause
- Compatibility
- Requires Python 3.10+ with scvelo, scanpy, and anndata. Verified against scvelo 0.3.4, whose dynamical model and pl.scatter need pandas<3 and whose stochastic estimator needs numpy<2; the deterministic estimator works on current releases.
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/scvelo/SKILL.md
- skills/scvelo/references/velocity_models.md
- skills/scvelo/scripts/rna_velocity_workflow.py
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