phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
- Version
- 1.2
- License
- Unknown
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/phylogenetics/SKILL.md
- skills/phylogenetics/references/iqtree_inference.md
- skills/phylogenetics/scripts/phylogenetic_analysis.py
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