histolab
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing, tissue detection, tile extraction, and stain normalization for H&E images. Best for simple pipelines, dataset preparation, and quick tile-based analysis. For advanced spatial proteomics, multiplexed imaging, or deep learning pipelines use pathml.
- Version
- 1.3
- License
- Apache-2.0 license
- Compatibility
- Requires Python 3.8–3.11 (histolab 0.7.0), OpenSlide system libraries, and Linux or macOS. Sample data via histolab.data requires pooch.
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/histolab/SKILL.md
- skills/histolab/references/core_capabilities.md
- skills/histolab/references/filters_preprocessing.md
- skills/histolab/references/slide_management.md
- skills/histolab/references/tile_extraction.md
- skills/histolab/references/tissue_masks.md
- skills/histolab/references/typical_workflows.md
- skills/histolab/references/visualization.md
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