gtars
Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.
- Version
- 1.3
- License
- MIT
- Compatibility
- Python bindings require Python 3.10+ and gtars 0.9.2. The Rust meta-crate and gtars-cli are 0.9.0 and require a Rust toolchain supporting Edition 2024; upstream declares no rust-version. Bundled audit CLIs use only Python 3.10+ standard library and are local/network-free. Remote constructors, pretrained tokenizers, refget, and BEDbase caching require explicit network and storage approval.
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
- Glob
Files
- skills/gtars/SKILL.md
- skills/gtars/references/cli.md
- skills/gtars/references/coverage.md
- skills/gtars/references/overlap.md
- skills/gtars/references/python-api.md
- skills/gtars/references/refget.md
- skills/gtars/references/tokenizers.md
- skills/gtars/scripts/__init__.py
- skills/gtars/scripts/_common.py
- skills/gtars/scripts/artifact_inspector.py
- skills/gtars/scripts/bed_validator.py
- skills/gtars/scripts/coverage_preflight.py
- skills/gtars/scripts/execution_plan.py
- skills/gtars/scripts/refget_digest_plan.py
- skills/gtars/scripts/tokenizer_manifest.py
Every link opens the file at its source, pinned to the revision this page describes.