flowio
Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event extraction, multi-dataset files, table export, and FCS 3.1 creation; use FlowKit for compensation, cytometry transforms, gating, or FlowJo workspaces.
- Version
- 2.1
- License
- BSD-3-Clause license
- Compatibility
- Requires Python 3.9-3.13, uv, and FlowIO 1.4.0. NumPy is installed with FlowIO; pandas is optional for DataFrame workflows. Runtime parsing is local and needs no credentials or network access.
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Bash
Files
- skills/flowio/SKILL.md
- skills/flowio/references/api_reference.md
- skills/flowio/references/fcs_semantics.md
- skills/flowio/references/sources.md
- skills/flowio/references/troubleshooting.md
- skills/flowio/references/workflows.md
- skills/flowio/scripts/inspect_fcs.py
Every link opens the file at its source, pinned to the revision this page describes.