deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
- Version
- 1.3
- License
- BSD license
- Compatibility
- Requires Python >3.8 and deepTools 3.5.6-compatible dependencies. The upstream project recommends conda/bioconda for full dependency resolution; repo examples use uv with pinned PyPI installs for reproducible command-line workflows.
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/deeptools/SKILL.md
- skills/deeptools/assets/quick_reference.md
- skills/deeptools/references/core_workflows.md
- skills/deeptools/references/effective_genome_sizes.md
- skills/deeptools/references/normalization_methods.md
- skills/deeptools/references/tools_reference.md
- skills/deeptools/references/workflows.md
- skills/deeptools/scripts/validate_files.py
- skills/deeptools/scripts/workflow_generator.py
Every link opens the file at its source, pinned to the revision this page describes.