cobrapy
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
- Version
- 1.3
- License
- GPL-2.0 license
- Compatibility
- Requires Python 3.9+ (cobra 0.30+ dropped 3.8). Install with uv pip install. GLPK (swiglpk) is the default solver; CPLEX/Gurobi optional. load_model fetches from bundled data, BiGG, or BioModels (network required for remote models).
Pinned to revision 70a605012eee, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/cobrapy/SKILL.md
- skills/cobrapy/references/api_quick_reference.md
- skills/cobrapy/references/workflows.md
Every link opens the file at its source, pinned to the revision this page describes.