jinko-task-paper2model
Reconstruct a published mechanistic, QSP, PK/PD, or ODE model in Jinkō from papers, supplements, equations, diagrams, tables, and optional source code. Use whenever the requested result is an executable paper reproduction, including when no code exists or a scanned PDF needs OCR. Produces a validated Jinkō model when evidence is sufficient, or a documented blocked or failed outcome, and always produces a reproduction report with explicit fidelity, confidence, assumptions, discrepancies, and numerical comparison where the paper supplies a target. Use jinko-task-from-nonmem when NONMEM is the primary implementation source.
- License
- MIT
- Compatibility
- Requires Jinkō project write access and an initialized jinko-sdk connection. Scanned documents require an approved OCR service or a provider-neutral OCR packet. Source-code execution requires explicit authorization.
Pinned to revision f5510623cac3, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/jinko-task-paper2model/SKILL.md
- skills/jinko-task-paper2model/agents/openai.yaml
- skills/jinko-task-paper2model/assets/reproduction-report-template.md
- skills/jinko-task-paper2model/assets/reproduction-spec.schema.json
- skills/jinko-task-paper2model/evals/evals.json
- skills/jinko-task-paper2model/references/evidence-and-ocr.md
- skills/jinko-task-paper2model/references/fidelity-and-confidence.md
- skills/jinko-task-paper2model/references/interpretation-policy.md
- skills/jinko-task-paper2model/references/report-delivery.md
- skills/jinko-task-paper2model/references/workflow.md
- skills/jinko-task-paper2model/scripts/paper2model_report.py
- skills/jinko-task-paper2model/scripts/test_interpretations.py
- skills/jinko-task-paper2model/scripts/test_paper2model_report.py
Every link opens the file at its source, pinned to the revision this page describes.