jinko-task-from-nonmem

Convert a NONMEM run into a Jinkō trial set-up via the jinko-sdk. Use this skill whenever the user wants to import, translate, port or migrate a NONMEM model, control stream, .mod/.ctl/.lst file, .ext estimates, .phi individual estimates or a NONMEM data set into Jinkō, or asks to reproduce a published population-PK model that exists as NONMEM code. Emits the computational model, virtual population, protocol design and output set, checks the result numerically against a declared reference, and can publish the evidence as a Jinkō document. Use jinko-model to author a model from scratch, jinko-protocol to edit an existing protocol, jinko-vpop to edit a population, and jinko-calibration-cmaes to fit parameters.

License

MIT

Compatibility

Needs `pip install "jinko-sdk[nonmem2jinko]"`; the converter ships with the SDK but its numerical extra does not install by default. Check set-up with the `jinko-sdk-setup` skill. Creating project items requires write access to the Jinkō project. The independent-parse check needs R with `nonmem2rx` and `rxode2`; without them the conversion still runs, but that check is unavailable rather than passed.