scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
- Version
- 1.4
- License
- BSD-3-Clause license
- Compatibility
- Requires Python 3.10+ and scikit-bio 0.7.4 (uv pip install scikit-bio==0.7.4). NumPy 2.0+ is required. Optional matplotlib/seaborn/plotly for plotting; biom-format for BIOM tables; polars/anndata for table interoperability.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/scikit-bio/SKILL.md
- skills/scikit-bio/SKILL_CN.md
- skills/scikit-bio/references/api_reference.md
- skills/scikit-bio/references/review.md
Every link opens the file at its source, pinned to the revision this page describes.