primekg
Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, biological association lookup, and hypothesis generation with relation and data provenance preserved.
- Version
- 1.4
- License
- Unknown
- Compatibility
- Requires Python 3.11+ and pandas. Network access is needed only to obtain public metadata/data; local queries need a downloaded PrimeKG CSV and several GB of available RAM.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/primekg/SKILL.md
- skills/primekg/SKILL_CN.md
- skills/primekg/references/data-contract.md
- skills/primekg/scripts/query_primekg.py
Every link opens the file at its source, pinned to the revision this page describes.