nextflow
Builds, runs, and debugs Nextflow DSL2 pipelines and nf-core workflows. Use for Nextflow, nf-core, .nf files, nextflow.config, processes/channels/operators, samplesheets, nf-test, modules/subworkflows, container and executor configuration, HPC/SLURM or cloud deployment, and failed or resumed pipeline runs.
- Version
- 1.4
- License
- Apache-2.0
- Compatibility
- Requires Bash 3.2+, Java 17-26 and Nextflow. nf-core tools requires Python 3.10+. Containers, scheduler access and network or service credentials depend on the selected workflow.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/nextflow/SKILL.md
- skills/nextflow/SKILL_CN.md
- skills/nextflow/references/configuration.md
- skills/nextflow/references/containers.md
- skills/nextflow/references/developing.md
- skills/nextflow/references/language.md
- skills/nextflow/references/nf-core-tools.md
- skills/nextflow/references/running-pipelines.md
- skills/nextflow/references/testing.md
Every link opens the file at its source, pinned to the revision this page describes.