histolab
Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multiplexed imaging or deep learning inference pipelines, use pathml.
- Version
- 1.5
- License
- Apache-2.0 license
- Compatibility
- Requires Python 3.8–3.11 and histolab 0.7.0 on Linux or macOS, plus native OpenSlide. Python 3.10 avoids scikit-image 0.19 source builds on macOS ARM. Optional pooch downloads samples; matplotlib plots results; large-image plus a tile source enables MPP extraction.
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Files
- skills/histolab/SKILL.md
- skills/histolab/SKILL_CN.md
- skills/histolab/references/core_capabilities.md
- skills/histolab/references/filters_preprocessing.md
- skills/histolab/references/slide_management.md
- skills/histolab/references/tile_extraction.md
- skills/histolab/references/tissue_masks.md
- skills/histolab/references/typical_workflows.md
- skills/histolab/references/visualization.md
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