geniml
Supports audited local Geniml genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.
- Version
- 1.4
- License
- MIT
- Compatibility
- Requires Python 3.12 and uv for the tested geniml 0.8.4 / gtars 0.10.0 stack; scEmbed needs AnnData 0.12.19 with Zarr 2.18.7 and the listed ML packages. Bundled planners and inspectors are dependency-free, local-only, and make no network requests.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
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- Write
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- Bash
- Glob
Files
- skills/geniml/SKILL.md
- skills/geniml/SKILL_CN.md
- skills/geniml/references/bedspace.md
- skills/geniml/references/consensus_peaks.md
- skills/geniml/references/region2vec.md
- skills/geniml/references/scembed.md
- skills/geniml/references/utilities.md
- skills/geniml/scripts/__init__.py
- skills/geniml/scripts/_common.py
- skills/geniml/scripts/bed_validator.py
- skills/geniml/scripts/consensus_plan.py
- skills/geniml/scripts/corpus_auditor.py
- skills/geniml/scripts/embedding_plan.py
- skills/geniml/scripts/model_artifact_inspector.py
- skills/geniml/scripts/tokenizer_compatibility.py
Every link opens the file at its source, pinned to the revision this page describes.