cobrapy
Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for systems biology and metabolic engineering.
- Version
- 1.5
- License
- GPL-2.0 license
- Compatibility
- Requires Python 3.9+ and cobra; examples tested with Python 3.12 and cobra 0.32.1. GLPK installs via swiglpk; commercial solvers need separate installation/licensing. Remote model downloads need network access; bundled textbook examples run offline.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/cobrapy/SKILL.md
- skills/cobrapy/SKILL_CN.md
- skills/cobrapy/references/api_quick_reference.md
- skills/cobrapy/references/workflows.md
Every link opens the file at its source, pinned to the revision this page describes.