bioservices
Provides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database protein annotation, pathway retrieval, chemical identifier mapping, and integrated biological data workflows with BioServices.
- Version
- 1.7
- License
- GPLv3 license
- Compatibility
- Requires Python >=3.9,<4 with bioservices==1.16.0 and internet access. EMBL-EBI BLAST submission requires a real contact email; the bundled script reads NCBI_EMAIL or an explicit parameter.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/bioservices/SKILL.md
- skills/bioservices/SKILL_CN.md
- skills/bioservices/references/identifier_mapping.md
- skills/bioservices/references/services_reference.md
- skills/bioservices/references/workflow_patterns.md
- skills/bioservices/scripts/batch_id_converter.py
- skills/bioservices/scripts/compound_cross_reference.py
- skills/bioservices/scripts/pathway_analysis.py
- skills/bioservices/scripts/protein_analysis_workflow.py
Every link opens the file at its source, pinned to the revision this page describes.