biopython
Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch processing, custom molecular-biology pipelines, BLAST automation, structure analysis, and motif analysis.
- Version
- 1.5
- License
- Biopython License Agreement
- Compatibility
- Requires Python 3.10+, NumPy, and Biopython 1.88. Optional plotting requires Matplotlib or ReportLab. Entrez and web BLAST require network access and a contact email; local BLAST, MUSCLE 5, Clustal Omega, and DSSP require separate executables.
Pinned to revision 68105dd992f1, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/biopython/SKILL.md
- skills/biopython/SKILL_CN.md
- skills/biopython/references/advanced.md
- skills/biopython/references/alignment.md
- skills/biopython/references/blast.md
- skills/biopython/references/databases.md
- skills/biopython/references/phylogenetics.md
- skills/biopython/references/review.md
- skills/biopython/references/sequence_io.md
- skills/biopython/references/structure.md
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