gtars

Inspects and plans work with Gtars, the Rust/Python/CLI toolkit for genomic intervals: BED RegionSet set algebra (reduce, setdiff, intersect, closest, cluster, gaps), overlap counts, consensus peak sets, coverage, tokenizers, fragment processing, and refget/BEDbase stores. Use when merging or comparing BED interval sets, building a consensus or universe from peaks, tokenizing regions for ML models, working with fragment files, or planning refget sequence-collection and BEDbase cache use. Use when checking BED coordinates, contigs, or strand before running gtars. Not for general BAM/VCF processing; use samtools or bedtools for that.

Version

1.3

License

MIT

Compatibility

Python bindings require Python 3.10+ and gtars 0.9.2. The Rust meta-crate and gtars-cli are 0.9.0 and require a Rust toolchain supporting Edition 2024; upstream declares no rust-version. Bundled audit CLIs use only Python 3.10+ standard library and are local/network-free. Remote constructors, pretrained tokenizers, refget, and BEDbase caching require explicit network and storage approval.