clinical-reports
Generates fail-closed draft JSON templates and runs local deterministic structure and consistency checks for clinical reports: CARE case reports, radiology, pathology and lab scaffolds, CONSORT 2025, SPIRIT 2025, ICH E3 CSRs, aggregate adverse-event tables, provenance manifests, terminology schemas, and de-identification process checklists. Use when drafting a case report for publication from a verified source-fact manifest. Use when checking a trial results manuscript, protocol, or CSR draft against its reporting structure. Use when building an aggregate safety table from synthetic or de-identified data. Use when routing an artifact to the right guideline. Not for diagnosis, treatment advice, individual case safety report creation, or filing and submission.
- Version
- 2.1
- License
- MIT
- Compatibility
- Requires Python 3.11+ only for optional dependency-free local scripts; no network access, credentials, external models, or image services.
Pinned to revision df088027ff23, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/clinical-reports/SKILL.md
- skills/clinical-reports/assets/adverse_event_aggregate_input_template.csv
- skills/clinical-reports/assets/case_report_template.json
- skills/clinical-reports/assets/clinical_trial_csr_template.json
- skills/clinical-reports/assets/clinical_trial_results_template.json
- skills/clinical-reports/assets/clinical_trial_safety_aggregate_template.json
- skills/clinical-reports/assets/consistency_manifest_template.json
- skills/clinical-reports/assets/deidentification_process_checklist.json
- skills/clinical-reports/assets/lab_report_template.json
- skills/clinical-reports/assets/pathology_report_template.json
- skills/clinical-reports/assets/provenance_manifest_template.json
- skills/clinical-reports/assets/quality_review_checklist.json
- skills/clinical-reports/assets/radiology_report_template.json
- skills/clinical-reports/assets/research_summary_template.json
- skills/clinical-reports/assets/terminology_manifest_template.json
- skills/clinical-reports/assets/trial_protocol_reporting_checklist.json
- skills/clinical-reports/references/README.md
- skills/clinical-reports/references/case_report_guidelines.md
- skills/clinical-reports/references/clinical_trial_reporting.md
- skills/clinical-reports/references/data_presentation.md
- skills/clinical-reports/references/diagnostic_reports_standards.md
- skills/clinical-reports/references/medical_terminology.md
- skills/clinical-reports/references/privacy_and_deidentification.md
- skills/clinical-reports/references/professional_review.md
- skills/clinical-reports/references/report_type_routing.md
- skills/clinical-reports/references/safety_reporting.md
- skills/clinical-reports/references/sources.md
- skills/clinical-reports/scripts/_common.py
- skills/clinical-reports/scripts/check_deidentification.py
- skills/clinical-reports/scripts/consistency_checker.py
- skills/clinical-reports/scripts/format_adverse_events.py
- skills/clinical-reports/scripts/generate_report_template.py
- skills/clinical-reports/scripts/provenance_validator.py
- skills/clinical-reports/scripts/terminology_validator.py
- skills/clinical-reports/scripts/validate_case_report.py
- skills/clinical-reports/scripts/validate_trial_report.py
Every link opens the file at its source, pinned to the revision this page describes.