arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
- Version
- 1.1
- License
- BSD-3-Clause license
Pinned to revision df088027ff23, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/arboreto/SKILL.md
- skills/arboreto/references/algorithms.md
- skills/arboreto/references/basic_inference.md
- skills/arboreto/references/distributed_computing.md
- skills/arboreto/scripts/basic_grn_inference.py
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