anndata
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
- Version
- 1.2
- License
- BSD-3-Clause license
- Compatibility
- Requires Python 3.11+ and uv. Examples target AnnData 0.12.16, with experimental APIs clearly marked where used.
Pinned to revision df088027ff23, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
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- Write
- Edit
- Bash
Files
- skills/anndata/SKILL.md
- skills/anndata/references/best_practices.md
- skills/anndata/references/concatenation.md
- skills/anndata/references/data_structure.md
- skills/anndata/references/io_operations.md
- skills/anndata/references/manipulation.md
Every link opens the file at its source, pinned to the revision this page describes.