tellurium
Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives. Use for reaction-network time courses, kinetic parameters, concentration dynamics and reproducible simulation experiments; steady-state constraint-based metabolic flux analysis belongs to cobrapy.
- Version
- 1.1
- License
- MIT
- Compatibility
- Requires Python 3.11 with Tellurium 2.2.13.1, libRoadRunner 2.10.0, Antimony 3.2.0, python-libsbml 5.21.2, python-libsedml 2.0.34 and python-libcombine 0.2.20. Network is needed for installation only. Native wheels were tested on macOS ARM64. No credentials or external services.
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Files
- skills/tellurium/SKILL.md
- skills/tellurium/assets/experiment.json
- skills/tellurium/assets/first-order.ant
- skills/tellurium/references/experiments.md
- skills/tellurium/scripts/kinetic_experiment.py
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