qiime2-amplicon

Processes paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic classifiers.

Version

1.1

License

MIT

Compatibility

Python 3.10+ for the standard-library validation helper; QIIME 2 2026.7 distribution with cutadapt, dada2, demux, feature-table, feature-classifier, taxa and types plugins for execution. Install through the official conda/container distribution, not PyPI. Requires a compatible trusted classifier and network for installation/reference downloads.