pyhealth
Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission, length-of-stay, drug recommendation, sleep staging, ICD coding, EEG events), instantiating models (Transformer, RETAIN, GAMENet, SafeDrug, MICRON, StageNet, AdaCare, CNN/RNN/MLP), training with the PyHealth Trainer, computing clinical metrics, and using medical code utilities (ICD/ATC/NDC/RxNorm lookup and cross-mapping). Use this skill whenever the user mentions PyHealth, MIMIC, eICU, OMOP, EHR modeling, clinical prediction, drug recommendation, sleep staging, medical code mapping, ICD/ATC codes, or any healthcare ML pipeline that fits the dataset → task → model → trainer → metrics pattern, even if "PyHealth" isn't named explicitly.
- Version
- 1.0
Pinned to revision de66e10cd0c8, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/pyhealth/SKILL.md
- skills/pyhealth/assets/starter_pipeline.py
- skills/pyhealth/references/datasets.md
- skills/pyhealth/references/examples.md
- skills/pyhealth/references/installation.md
- skills/pyhealth/references/medcode.md
- skills/pyhealth/references/models.md
- skills/pyhealth/references/tasks.md
Every link opens the file at its source, pinned to the revision this page describes.