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k-dense-ai/drug-discovery-agent-skills

v1.3.0MIT

Agent Skills for small-molecule and protein therapeutics: target validation and human genetics, bioactivity and chemical space, generative design and retrosynthesis, docking, free energy and dynamics, ADMET and PK translation, protein, antibody, degrader and oligonucleotide design, and the clinical and regulatory record.

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skills

uniprot-rcsb

Retrieve protein sequences, annotation, and structures from UniProtKB, the RCSB PDB, and AlphaFold DB. Use this skill to resolve a gene or protein name to a UniProt accession, pull sequences and FASTA files, find binding sites and domains, search the PDB by UniProt accession, sequence, ligand, or text, download mmCIF/PDB coordinates and biological assemblies, fetch AlphaFold models with their pLDDT confidence, and check whether a structure is actually usable before docking or simulating it. Also trigger on UniProt accessions, PDB ids, rest.uniprot.org, search.rcsb.org, files.rcsb.org, alphafold.ebi.ac.uk, id mapping, SEQRES, or missing residues.

Version
1.0
License
MIT
Compatibility
Requires Python 3.10+ and outbound HTTPS access to rest.uniprot.org, search.rcsb.org, data.rcsb.org, files.rcsb.org, and alphafold.ebi.ac.uk. The bundled scripts use only the Python standard library and need no API key or account.
Read SKILL.md at the source

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Pre-approved tools experimental

Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.

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