target-safety
Assemble the human genetic evidence for and against a target before a programme commits to it — the evidence class that most improves the odds of surviving clinical development. Use this skill to pull gnomAD constraint metrics (LOEUF, pLI, observed/expected) that show whether loss of function is tolerated in people, retrieve GWAS Catalog associations and fine-mapped credible sets for a gene, and read a natural human knockout as a safety readout. Also trigger on gnomAD, LOEUF, pLI, loss-of-function intolerance, mutational constraint, GWAS Catalog, credible set, human knockout, genetic support, or target safety dossier.
- Version
- 1.0
- License
- MIT
- Compatibility
- Requires Python 3.10+ and outbound HTTPS access to gnomad.broadinstitute.org and www.ebi.ac.uk. The bundled clients use only the Python standard library and need no API key. gnomAD is queried through its public GraphQL endpoint; the GWAS Catalog v2 REST service can be slow, so timeouts are generous.
Pinned to revision f67572246d9b, so it is the text this page describes rather than whatever the author pushed since.
Pre-approved tools experimental
Experimental field. Support varies between clients, so this list is what the author declared, not what your client will enforce.
- Read
- Write
- Edit
- Bash
Files
- skills/target-safety/SKILL.md
- skills/target-safety/references/gnomad-constraint.md
- skills/target-safety/references/gwas-catalog.md
- skills/target-safety/references/interpreting-genetic-evidence.md
- skills/target-safety/scripts/_common.py
- skills/target-safety/scripts/gnomad_constraint.py
- skills/target-safety/scripts/gwas_evidence.py
- skills/target-safety/scripts/safety_dossier.py
Every link opens the file at its source, pinned to the revision this page describes.