tellurium
Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives. Use for reaction-network time courses, kinetic parameters, concentration dynamics and reproducible simulation experiments; steady-state constraint-based metabolic flux analysis belongs to cobrapy.
- Version
- 1.1
- License
- MIT
- Compatibility
- Requires Python 3.11 with Tellurium 2.2.13.1, libRoadRunner 2.10.0, Antimony 3.2.0, python-libsbml 5.21.2, python-libsedml 2.0.34 and python-libcombine 0.2.20. Network is needed for installation only. Native wheels were tested on macOS ARM64. No credentials or external services.
Pinned to revision 866a8c316da0, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/tellurium/SKILL.md
- skills/tellurium/assets/experiment.json
- skills/tellurium/assets/first-order.ant
- skills/tellurium/references/experiments.md
- skills/tellurium/scripts/kinetic_experiment.py
Every link opens the file at its source, pinned to the revision this page describes.