nwb-conversion
Converts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks evidence-based clock alignment, and produces schema validation, NWB Inspector findings and round-trip checks. Use for NWB conversion and synchronization of planar single-channel two-photon TIFF imaging plus timestamped behavioral position CSV; this skill does not perform spike sorting or claim tested support for arbitrary acquisition formats.
- Version
- 1.1
- License
- MIT
- Compatibility
- Requires Python 3.12 with neuroconv[tiff] 0.10.2, PyNWB 4.2.0, NWB Inspector 0.7.2, roiextractors 0.10.0, tifffile 2026.9.20, zarr 2.18.7 and hdmf-zarr 0.11.3. Local HDF5 file access is required. Network is needed only for installation; no credentials.
Pinned to revision 866a8c316da0, so it is the text this page describes rather than whatever the author pushed since.
Files
- skills/nwb-conversion/SKILL.md
- skills/nwb-conversion/assets/session-template.json
- skills/nwb-conversion/references/input-contract.md
- skills/nwb-conversion/references/upstream-review.md
- skills/nwb-conversion/scripts/convert_session.py
Every link opens the file at its source, pinned to the revision this page describes.