Skip to content

aidenlab/juicebot

v2.0.0MIT

Geenee: AI control of a genome workspace with the igv genome browser and the Juicebox Hi-C contact-map viewer side by side. Search ENCODE/4DN, load maps and tracks, navigate genes and loci, compare, share. Connects to the Aiden Lab's hosted MCP server; nothing runs locally.

GitHubOpen Website
skills

geenee

Drives Geenee, the Aiden Lab's genome workspace holding the igv genome browser and the Juicebox Hi-C contact-map viewer, through the Geenee MCP tools (igv_*, juicebox_*, open_geenee), or through the bundled geenee CLI when the MCP connector is not available. Use whenever the user mentions Geenee, IGV, Juicebox, JuiceBot, a genome browser, Hi-C or contact maps, .hic files, loops, TADs, compartments, ENCODE or 4DN data, bigWig/BED/peak tracks, or asks to open, load, navigate, compare, track, or share a genome view.

Read SKILL.md at the source

Pinned to revision 52244a901513, so it is the text this page describes rather than whatever the author pushed since.

Files

Every link opens the file at its source, pinned to the revision this page describes.